Plant MITE

SE2050483

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5685
Medicago truncatula
SE2050483
PIF/harbinger
To6
MtChr6:22710816-22711162
TAA
AGACCATCCACA

Secondary structure and sequence

TSD TIR

5'

3'

TA            ATATATCACCTTAAAC  A  -     AATTAA -----     AT  CCACATCACTTATTTTACGGTAATACTTAATAAACACCAATTTTCTCCAACCCAACACCTCAAAAGAAATTATTAAATAAGTCCTACAAATAATTTTATATCATTACATTTCAACAAAAATTATTTA
  AGACCATCCACA                TG GT GGTTA      T     TTCAT  GT                                                                                                                               
  ||||||||||||                || || |||||      |     |||||  ||                                                                                                                                
  TCTGGTAGGTGT                TA CC CCCAC      G     GATAA  AT                                                                                                                               
AA            ----------------  -  A     ------ AAGTA     --  CGTAGTATAATTTATCCGTGGGGGTAACACCTCATATTATATACCCACCGATACCTCTTGCCACCGATACCTTCGTGGGAGAGAAAGAAGTAAAAAGTACCCAGTGTAAATTATTTAGAATTATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050483

TAAGACCATCCACAATATATCACCTTAAACTGAGTGGTTAAATTAATTTCATATGTCCACATCACTTATTTTACGGTAATACTTAATAAACACCAATTTTCTCCAACCCAACACCTCAAAAGAAATTATTAAATAAGTCCTACAAATAATTTTATATCATTACATTTCAACAAAAATTATTTATTTTATTAAGATTTATTAAATGTGACCCATGAAAAATGAAGAAAGAGAGGGTGCTTCCATAGCCACCGTTCTCCATAGCCACCCATATATTATACTCCACAATGGGGGTGCCTATTTAATATGATGCTAAATAGATGAAGCACCCACCATTGTGGATGGTCTAA

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