SE2020493

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5695
  • Medicago truncatula
  • SE2020493
  • Mutator
  • M29
  • MtChr5:6503727-6504131
  • TAAAAAATA
  • TAGGCCAAATATCTCCCCGGGTCCTTAAGTTTCATGTTTGTTTCAGATAGATCCTTTAAGTTTCTAAGATTTCAGATAGGTCCTTTAAGTTTGAAGTTTGTTTCGGATAGACCCTTTAAGTTTCTAAGATTTCACATAGGTCCTTTAAGTTTCGAGTTTATTTCAGATAGGTCCTTTCTATCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA                CC        -                 C      A                 A                       GA                AC                A     C                        A          G             CCTCC     GCC
       TAGGCCAAATATCTCC  GGGTCCTT AAGTTTCATGTTTGTTT AGATAG TCCTTTAAGTTTCTAAG TTTCAGATAGGTCCTTTAAGTTT  AGTTTGTTTCGGATAG  CCTTTAAGTTTCTAAG TTTCA ATAGGTCCTTTAAGTTTCGAGTTT TTTCAGATAG TCCTTTCTATCAA     GTTAA   
       ||||||||||||||||  |||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||     |||||   A
       ATCCGGTTTATGGAGG  CCCAGGAA TTCAAGGTGCAAACAAA TCTATC AGGAAATTCAAAGATTC AAAGTCTATCCAGGAAATTCAAA  TCAAACAAAGCCTATC  GGAAATTCAAAGATTC AAAGT TATCCAGGAAATTCAAAGCTCAAA AAAGTCTATC AGGAAAGATAGTT     TAGTT   
ATAAAAA                AA        A                 A      C                 C                       GC                CA                C     C                        C          A             -----     GAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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