SE2020494

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5696
  • Medicago truncatula
  • SE2020494
  • Mutator
  • M17
  • MtChr8:23777417-23777617
  • TTTAAAAAA
  • AAAGAGTAATGATACATAGACACCCTTAGGTGGCAATACATCCTTGTACACCCACACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAA                           AG  GG A               -    CA  ------------------------------------AAAATC    ACGTAGTC
      AAAGAGTAATGATACATAGACACCCTT  GT  C ATACATCCTTGTACA CCCA  CA                                          TGAC        
      |||||||||||||||||||||||||||  ||  | ||||||||||||||| ||||  ||                                          ||||        A
      TTTCTCATTACTATGTATCTGTGGGAA  TA  G TATGTGGGAACATGT GGGT  GT                                          CGCC        
AAAAAA                           -A  AA G               A    AC  AATCCTTCTCTCTTCTCCTCTCTTTTCTCTTTCACACGAACA    CCAGGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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