SE2020503

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5705
  • Medicago truncatula
  • SE2020503
  • Mutator
  • M29
  • MtChr8:1334448-1334924
  • TATTTTGTT
  • GGCCAAATACCTCCTCGAGTCCTTTAAGTTTCATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTGTT   C          T                C        TTTATACAGGTCCTTTAAGCTTTTAAGGTTTCAGATAAGTCCTTTCAGTTTCGAGTTTGTTTCGGATAGGTCCTGTTAGTTTCTAAGGTTTCAGATCGGTCATTTAAATTTCGAGTTTGTATCAGATAGGTCCTTTCTATCAACCTCCGTTAAGCCAAAGTTGATATGTATGTTAAGCCAAAGTTGATC
         GGC AAATACCTCC CGAGTCCTTTAAGTTT ATGTTTGT                                                                                                                                                                                             
         ||| |||||||||| |||||||||||||||| ||||||||                                                                                                                                                                                             T
         CCG TTTATGGAGG GCTCAGGAAATTCAAA TGCAAACA                                                                                                                                                                                             
TTGTTTTAT   A          T                A        AAGTCTATCCAGGAAATTCAAAGATTTCAAAGTCTATTCAGTAAATGCAAAGCTCAAACAAAGTCTATCCAGTAAAGACAGTTGGAGGCAATTCAGTTTCAATAATACAGGCAATTCGGTTTCGACTATACAGGCAATTCACCCACTCCACCAAGAGAGACTGTGAACCGTAGTTAAAAAAGGGGTTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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