SE2020504

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5706
  • Medicago truncatula
  • SE2020504
  • Mutator
  • M19
  • AC157372:59442-59927
  • TTTAAATAT
  • AGGGTTAAAATATGATTTTGGTCCCTATAAATATACCAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCGCTCTAAAATTTTTCATCTTCATTTTTGGTCCCTCCTTATAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAAATAT         A    A                     C                  C      A                    G  C          C   TTC             CC  A     AAACTCATATGTA     --C        -G         T        AATTCAT      A         C    A                                   CAT
         AGGGTTAAA TATG TTTTGGTCCCTATAAATATAC AACTTTTCGTTTTAGTCC TCTAAA TTTTCCTTCAACTTTTAGTC CT TAAAATTTTT ATC   ATTTTTGGTCCCT  TT TAAGT             TAATT   ATATTTTT  AATAAAATT TGCAGAAA       AATATT TAAGAATCT TCCC AAAAAGTTTAGAATTTTTTAACAAAACATGAATTT   
         ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || |||||||||| |||   |||||||||||||  || |||||             |||||   ||||||||  ||||||||| ||||||||       |||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||    
         TCCCAATTT ATAT AAAACTAGGGATATTTATATG TTGAAAAGCAAAATCAGG AGATTT AAAAGGAAGTTGAAAATCAG GA ATTTTAAAAG TAG   TGAAAGCCAGGGA  AA ATTCA             ATTAA   TATAAAAA  TTATTTTAA ACGTCTTT       TTATAA ATTTTTAGA AGGG TTTTTTAAATCTTAAAAAATTGTTTTGTATTTAAA   
 ATATAAAT         -    A                     A                  A      A                    G  T          T   TGA             TA  A     -------------     AAT        AA         C        ACACATC      C         A    C                                   TTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End