Plant MITE

SE2030506

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5708
Medicago truncatula
SE2030506
hAT
Hat10
MtChr5:25674596-25674793
TAAGTGAC
GTGACCTATGAAGCACGGACAC

Secondary structure and sequence

TSD TIR

5'

3'

TAA  G  ---          C      CTTTT    TACGTGTGTCCCGGTGTCGGATACGCGTTGGTGTCCGACACCAACACGACACCTATGATTACACTG
   GT AC   CTATGAAGCA GGACAC     GGAT                                                                  
   || ||   |||||||||| ||||||     ||||                                                                  A
   CA TG   GATACTTCGT CCTGTG     TGTG                                                                  
     G  AAT          A      ---TC    CCTGTGGCCTGTACTGTACCTGTGACTGTGCAGCTATGGCTATTTTAAAACTCTTTTACTGTATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030506

TAAGTGACCTATGAAGCACGGACACCTTTTGGATTACGTGTGTCCCGGTGTCGGATACGCGTTGGTGTCCGACACCAACACGACACCTATGATTACACTGAATTATGTCATTTTCTCAAAATTTTATCGGTATCGACGTGTCAGTGTCCATGTCATGTCCGGTGTCCGTGTCTGTGTCCATGCTTCATAGTAAGTGAC

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