Plant MITE

SE2020518

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5720
Medicago truncatula
SE2020518
Mutator
M75
MtChr5:7598207-7598400
ATATAATAT
ATATAATATGGGTCTTGCTAACCAGTGCCCTAAGGGCAATGGTTAAAG

Secondary structure and sequence

TSD TIR

5'

3'

    A       TCT         G      AA     A         ATCCCATTAAT     CTTTATCTTGAAAATACAAGTCTTTAATTTTTTCTTAG
ATAT ATATGGG   TGCTAACCA TGCCCT  GGGCA TGGTTAAAG           AGAAA                                      
|||| |||||||   ||||||||| ||||||  ||||| |||||||||           |||||                                       
TATA TATACCT   ACGATTGGT ACGGGA  CCTGT ACCAATTTC           TGAAT                                      
    A       CTT         A      AC     A         ----------A     TTATTCATTCAAAGGTAACTTTTCACCGCATTACTAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020518

ATATAATATGGGTCTTGCTAACCAGTGCCCTAAGGGCAATGGTTAAAGATCCCATTAATAGAAACTTTATCTTGAAAATACAAGTCTTTAATTTTTTCTTAGCAATCATTACGCCACTTTTCAATGGAAACTTACTTATTTAAGTACTTTAACCAATGTCCCAAGGGCAATGGTTAGCATTCTCCATATAATAT

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