Plant MITE

SE2020520

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5722
Medicago truncatula
SE2020520
Mutator
M57
MtChr3:30350733-30350942
TTAAATTTG
TAAATTTGGGGTCAATATCCTCTCCATTTATAAATTTCTCCATTTGTTCTATTTAGAGAGATAAAGACACATAAAAAGTAA

Secondary structure and sequence

TSD TIR

5'

3'

T        -       T                     CTC        - T    --        AA     CAT         AAAATAATTAAT A       A  ---   T
 TAAATTTG GGGTCAA ATCCTCTCCATTTATAAATTT   CATTTGTT C ATTT  AGAGAGAT  AGACA   AAAAAGTAA            G TGGTGGG CC   CAC 
 |||||||| ||||||| |||||||||||||||||||||   |||||||| | ||||  ||||||||  |||||   |||||||||            | ||||||| ||   ||| T
 GTTTAAAT CCCAGTT TAGGAGAGGTAAATATTTAAA   GTAAACAA G TAAA  TCTCTCTA  TCTGT   TTTTTTATT            C ACCACCC GG   GTG 
         T       C                     AAA        C T    CT        --     --T         ------------ -       A  ATA   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020520

TTAAATTTGGGGTCAATATCCTCTCCATTTATAAATTTCTCCATTTGTTCTATTTAGAGAGATAAAGACACATAAAAAGTAAAAAATAATTAATGATGGTGGGACCCACTTAGTGATAGGACCCACCACTTATTTTTTTTGTCTATCTCTCTTCAAATTGCAACAAATGAAAAAATTTATAAATGGAGAGGATCTTGACCCTTAAATTTG

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