SE2030522

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5724
  • Medicago truncatula
  • SE2030522
  • hAT
  • Hat15
  • MtChr5:31984350-31984729
  • ATCTAACC
  • CAGTGGCGGATCTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTAACC               AACTTTTTT   AG       A      - -- -T   -------  ATATATATATCAGTTTTAAAATATTAATGAAATAATGAATTAGCCTAGTGGTTTATTTTCCTGGAACAACTATAGGGAACGGTGGTTCGATTCCCATTAGGACCTCTTTTTTTGAGTAAAGTATTAA
        CAGTGGCGGATCTTG         TCT  GGGTGCC AATATT T  T  AGA       AT                                                                                                                               
        |||||||||||||||         |||  ||||||| |||||| |  |  |||       ||                                                                                                                                
        GTCACCGCCTAGAAC         GGA  TCCACGG TGACGT G  G  TGA       TT                                                                                                                               
CCAATCTA               --CACCTCT   CG       -      A GG AT   AATGATA  AATAGTATAATACGTACTATTAAGTTTGCCTCGTAACAACAACGTCACCTAACCACTCAAAGTTTTGGGGGGTCGACGCACCCAAGCTAGGAGCAATCGACAAAAAAAATATAAAAGTTAACATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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