Plant MITE

SE2020525

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5727
Medicago truncatula
SE2020525
Mutator
M91
AC159090:110969-111159
TATCGCAAA
GCAAAGAGAAATGATATTTGTACAACCATTTTTGTACAAC

Secondary structure and sequence

TSD TIR

5'

3'

TATC  -AA    AAA         T     CA    T       CTTCTATCTCATACTCACATTATCTTCTTATTCTCTCTCTTCCTTT     TCTCTATTGTTTTTGACCAA
    GC   AGAG   TGATATTTG ACAAC  TTTT GTACAAC                                              TTCTC                    
    ||   ||||   ||||||||| |||||  |||| |||||||                                              |||||                     
    CG   TCTC   ACTATAAAC TGTTG  AAAA CATGTTG                                              TGTTG                    
 AAA  CTA    ATC         T     AG    C       ---------------------------------------AAAACCC     GAACAACACAAGAGAAGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020525

TATCGCAAAGAGAAATGATATTTGTACAACCATTTTTGTACAACCTTCTATCTCATACTCACATTATCTTCTTATTCTCTCTCTTCCTTTTTCTCTCTCTATTGTTTTTGACCAATAAGAAGAGAACACAACAAGGTTGTCCCAAAAGTTGTACCAAAAGAGTTGTTCAAATATCACTACTCTATCGCAAA

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