SE2020528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5730
  • Medicago truncatula
  • SE2020528
  • Mutator
  • M116
  • MtChr5:14743912-14744104
  • TTAATCTAA
  • TAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATC     AGAA              CC   A            CACCAAAAA     AGTT     TAAAAATT       -TTA      GAT
      TAAGG    TGTTAATCAGTGCC  CGG ACATTGGTTAAG         AAGTA    TTTAT        AATGTAA    TTACTT   
      |||||    ||||||||||||||  ||| ||||||||||||         |||||    |||||        |||||||    ||||||    
      ATTCC    ACAATTGGTCACGG  GCC TGTGACCAATTT         TTTAT    AAATA        TTATATT    AGTGAA   
AATCTA     CAGA              AA   C            -CTTAGATA     -ATT     CAGAACTT       TGAC      AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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