SE2020529

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5731
  • Medicago truncatula
  • SE2020529
  • Mutator
  • M19
  • MtChr5:14489802-14490306
  • TACACAAAA
  • AGGGTTAAATATGTTTTTGGTCCCTATAAATATACCAAATTTTCGTTCTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCCTATAAAATTTTCAATCACTACTTTTGGTCCCTATTTTTAAGTTAATTTTAGTATTTTTTAATGAAATTGTGCAGAAATGTGTATAATATTGTAGAAATATTTCTCAGAAAAAATTAGAATTTTTTAACAAAATGTAAATTTACATGAATTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TACACAAA                     C            CC  A    C   C     C                             C  T         A   AC              A    T    T     -----------TA        T         GTG  G   T  G            -   ATA    T       AA                      A      C   AA      AC
        AGGGTTAAATATGTTTTTGGT CCTATAAATATA  AA TTTT GTT TAGTC CTCTAAAATTTTCCTTCAACTTTTAGTCC TA AAAATTTTC ATC  TACTTTTGGTCCCT TTTT AAGT AATTT             GTATTTTT AATGAAATT   CA AAA GT TATAATATTGTA GAA   TTTC CAGAAAA  TTAGAATTTTTTAACAAAATGT AATTTA ATG  TTTTTA  
        ||||||||||||||||||||| ||||||||||||  || |||| ||| ||||| ||||||||||||||||||||||||||||| || ||||||||| |||  |||||||||||||| |||| |||| |||||             |||||||| |||||||||   || ||| || |||||||||||| |||   |||| |||||||  |||||||||||||||||||||| |||||| |||  ||||||   
        TCCCAATTTATACAAAAACTA GGATATTTATAT  TT AAAA TAA ATTAG GAGATTTTAAAAGGAAGTTGAAAATCAGG AT TTTTAAAAG TAG  GTGAAAACCAGGGA AAAA TTCA TTGAG             TATAAAAA TTATTTTAA   GT TTT TA GTATTATAATAT CTT   GAAG GTTTTTT  AATCTTAAAAAATTGTTTTGTA TTAAAT TAT  AAAAAT  
AAAACACA                     A            AC  A    A   A     A                             A  T         G   AA              G    T    T     TATACATCTTAAG        C         AAA  A   T  A            T   AGA    -       AA                      C      -   -A      AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End