SE2020531

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5733
  • Medicago truncatula
  • SE2020531
  • Mutator
  • M9
  • MtChr2:28812145-28812476
  • TTTCATTAA
  • AAGGTTTAATAGCAGTTTTTGCCCTTAACTTTCACAAAGTTGCGATTTTGGCCCCCTAAGAAAAAAAACTACAAAACCGCCCCCTAAGTTTTACAATTGTAGCAGTTTTGGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCATT                   T     -       CA                                            G             A  A    A            C ACAA         ----      AAAAAAAATAACACTT   ACCTCACTTAGG
       AAGGTTTAATAGCAGTTTT GCCCT TAACTTT  CAAAGTTGCGATTTTGGCCCCCTAAGAAAAAAAACTACAAAACC CCCCCTAAGTTTT CA TTGT GCAGTTTTGGCC C    GGCCAATTT    TTGGTT                GGC            
       ||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |||||||||||| |    |||||||||    ||||||                |||             
       TTCCGAATTATCGTCAAAA CGGGG ATTGAAG  GTTTCAACGCTAAAACCGGGGGATTCTTTTTTTTGATGTTTTGG GGGGGATTCAAAA GT GACA CGTCAAAACCGG G    CCGGTTAAA    AGCCAG                TGC            
AATTACT                   T     G       AG                                            -             C  A    C            A -ATC         ACTG      ---------------A   GACTGCACCGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3