Plant MITE

SE2020532

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5734
Medicago truncatula
SE2020532
Mutator
M100
MtChr3:43771215-43771535
AATAAATTA
GGCTAAACTTCACTTTTCGCCCTCTAAGTTTCAAAATGTTGCGATTTTGACCCTCTATTAAAAAAATGGCAAAAGTGACCCC

Secondary structure and sequence

TSD TIR

5'

3'

AATAAATTA       CTT                A             GC       A                -      AAG  A    TAT   T ---   AAATATGCTCTTTTGACCTCCTAACATAAGGAAAATATGCTTTTTGACCCCTTATCTT
         GGCTAAA   CACTTTTCGCCCTCTA GTTTCAAAATGTT  GATTTTG CCCTCTATTAAAAAAA TGGCAA   TG CCCC   GTT A   GGG                                                          
         |||||||   |||||||||||||||| |||||||||||||  ||||||| |||||||||||||||| ||||||   || ||||   ||| |   |||                                                          T
         CCGATTT   GTGAAAAGCGGGGGAT CAAAGTTTTACAA  CTAAAAC GGGAGATAATTTTTTT ACCGTT   AC GGGG   GAA G   CGT                                                          
ATTAAATAA       CAC                A             AA       C                T      AAA  C    ---   - TAG   TTTAACGACTCTTCTGCGGTGCACAGGGTTTTTTACCCGGTATTAGCGTTGAAAAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020532

AATAAATTAGGCTAAACTTCACTTTTCGCCCTCTAAGTTTCAAAATGTTGCGATTTTGACCCTCTATTAAAAAAATGGCAAAAGTGACCCCTATGTTTAGGGAAATATGCTCTTTTGACCTCCTAACATAAGGAAAATATGCTTTTTGACCCCTTATCTTTACAAAAAGTTGCGATTATGGCCCATTTTTTGGGACACGTGGCGTCTTCTCAGCAATTTTGCGATGAAGGGGGCCAAAATTGCCATTTTTTTTAATAGAGGGCCAAAATCAAAACATTTTGAAACATAGGGGGCGAAAAGTGCACTTTAGCCAATAAATTA

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