Plant MITE

SE2050535

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5737
Medicago truncatula
SE2050535
PIF/harbinger
To4
MtChr4:15664095-15664308
TAT
ATGGGCCTGTT

Secondary structure and sequence

TSD TIR

5'

3'

T           TGGATTGGCT                C                                  ATT            G  AAGGTA   - ATGAAACAGCTTATG
 ATGGGCCTGTT          TATTTTTGAGCTTATG AAAATAGCTTATGCAAATAAATAAGCTTTTATGT   ATTCATAAGTTT TC      GTT T               
 |||||||||||          |||||||||||||||| ||||||||||||||||||||||||||||||||||   |||||||||||| ||      ||| |                
 TATCCGGGCAA          ATAAAAACTCGAATAC TTTTATCGAATACGTTTATTTATTCGAAAATACG   TAAGTATTCAAG AG      CGA T               
            ----------                T                                  -AT            -  ------   T GTTTTTAACATAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050535

TATGGGCCTGTTTGGATTGGCTTATTTTTGAGCTTATGCAAAATAGCTTATGCAAATAAATAAGCTTTTATGTATTATTCATAAGTTTGTCAAGGTAGTTTATGAAACAGCTTATGAAGATACAATTTTTGTTAGCGAGAACTTATGAATTAGCATAAAAGCTTATTTATTTGCATAAGCTATTTTTCATAAGCTCAAAAATAAACGGGCCTAT

Copy Cancel