SE2010539

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5741
  • Medicago truncatula
  • SE2010539
  • Tc1/Mariner
  • St6
  • MtChr4:34564858-34565154
  • TA
  • TACTCCCTCCGTCCCATAATAACTGAGTCATTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
                TAA           TTT  AAA          CC - AAATAACTGAACCATTTCACTTTTTGATACAATATTAATTACTTTTTTCCCTTTATAACTCTAATCAATACTACTTTCATCATTTCCAATTCAATATA
TACTCCCTCCGTCCCA   TAACTGAGTCA   GC   AAAAAAGTGT  C A                                                                                                  
||||||||||||||||   |||||||||||   ||   ||||||||||  | |                                                                                                  T
ATGAGGGAGGCAGGGT   ATTGACTCGGT   CG   AGTAAAGTGT  G A                                                                                                  
                CTA           TTT  ---          -- C TAATTCTTTTTACATATTTACTTCCTCTCTCTTTTTTATCAAAATTCACGTGAACAATTCATAATCACGTAAGAGGTGACAGTATTTACATTTCACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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