Plant MITE

SE2020552

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5754
Medicago truncatula
SE2020552
Mutator
M121
AC233100:86942-87138
TTTTTTTAA
AAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTTT    AAAA           -----    TTAGGGCAAGGGCACTCTTTAAATAGTTTAGATAGTAAGTTTTTATGAAAATTTGTGCATTTAATG
       AAGG    TGTTAACGAGT     GCCC                                                                  
       ||||    |||||||||||     ||||                                                                  A
       TTCC    ACAATTGCTCA     TTCT                                                                  
AATTTTT    -AGA           CAGAA    TATGAGAAATTCTTAAGATTTAATTTTTTAATAAATAACTTTTTCATATTACGAAGTTAAAGGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020552

TTTTTTTAAGGAAAATGTTAACGAGTGCCCTTAGGGCAAGGGCACTCTTTAAATAGTTTAGATAGTAAGTTTTTATGAAAATTTGTGCATTTAATGAATTGGAAATTGAAGCATTATACTTTTTCAATAAATAATTTTTTAATTTAGAATTCTTAAAGAGTATTCTTAAGACACTCGTTAACAAGACCTTTTTTTAA

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