SE2020553

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5755
  • Medicago truncatula
  • SE2020553
  • Mutator
  • M38
  • MtChr4:12463323-12463721
  • TTTTTATTT
  • GGGGAAGTAGTCACTTTGGTCCCTGAATGAGTAACAAGTAGTCACAATAGTCCCTCAATGTATCAAAATTCCAAAATAGTCCCTGATTGTGCACTTTGTTAATCAAAATAGTCCTTGATATTAAAATATTTCGTTAATATTGTCATATTAGTCCTTCAATATACTTACT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTATTT    A        C      C        A   A                   C                C     T    C     T  G          A           C     A  A     T   G       TG     T   -  C  CA     CTT   -TATTAT  ---TGTT   C TTA
         GGGG AGTAGTCA TTTGGT CCTGAATG GTA CAAGTAGTCACAATAGTCC TCAATGTATCAAAATT CAAAA AGTC CTGAT GT CACTTTGTTA TCAAAATAGTC TTGAT TT AAATA TTC TTAATAT  TCATA TAG TC TT  ATATA   ACT       CA       AGT C   
         |||| |||||||| |||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||| |||| ||||| || |||||||||| ||||||||||| ||||| || ||||| ||| |||||||  ||||| ||| || ||  |||||   |||       ||       ||| |    
         CCCC TTATCAGT AAACCA GGACTTAC CAT GTTCATCAGTGTTATCAGG AGTTACATAGTTTTAA GTTTT TCAG GACTA CA GTGAAACAAT AGTTTTATCAG GATTG GA TTTAT AAG AATTATG  AGTGT ATT AG AA  TATAT   TGA       GT       TCA G   
TTTATTTTT    A        A      A        A   C                   A                A     T    A     T  G          C           A     C  A     T   G       --     T   G  A  AC     CTT   TTTTACT  TATTTAT   T CAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End