SE2030557

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5759
  • Medicago truncatula
  • SE2030557
  • hAT
  • Hat37
  • MtChr3:36906642-36907001
  • TTAATGAT
  • TTAATGATCAGTGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A   T   T          G    AAATATTGGGGGGAGCGGTAAATATGAACTAAATATTATAATTGAAATTCATAAAAGTTATATACAATTTCATCCAAAAAATATCACCGCAATAGCTCAAACACGAGACTAAAACTTAAAATATACTATATACCAACTAGAGAGGTGAGAAGA
 TTA TGA CAG GGCGGATCTT CCGA                                                                                                                                                         
 ||| ||| ||| |||||||||| ||||                                                                                                                                                         A
 AGT ATT GTC CCGCCTAGAG ATAA                                                                                                                                                         
T   A   -   C          -    CTCTGGGGGTCCACGACACCGTGGGGGGTTATTTTTTTTTTTTTTTTAAACATATGACTTTTAATGATATCATGGGAACTTAAGGGGACTAACAAAAACAGACGAGAGAGAGCCATGGGGGAGAGGAGAGGTAGGAGTGTATAGTTTTGTGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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