SE2020563

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5765
  • Medicago truncatula
  • SE2020563
  • Mutator
  • M122
  • AC146630:22077-22445
  • TATATTTTT
  • GGCTTAAACGTACTTTTGGCCCCCTAAGTTTGCACTAGTTGCGATATTGGCCCCCTGTTAAAAAAAAACCACATTCCAACCCCCTAAGTTTCCCCCTTTTGCAACTTTCAATTTTGATCATTCAAAACAAGTGGGCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTTTT                           G                 A                      -C         A                                                -   G -----       TTTGTT  G    -TT    AT  A    G  AAT
         GGCTTAAACGTACTTTTGGCCCCCTAA TTTGCACTAGTTGCGAT TTGGCCCCCTGTTAAAAAAAAA  CACATTCCA CCCCCTAAGTTTCCCCCTTTTGCAACTTTCAATTTTGATCATTCAAAA CAA T     GGGCAGT      GA CAAG   TCAG  TC TAGG TA   
         ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |     |||||||      || ||||   ||||  || |||| ||   A
         CCGAATTTGTGTGAAAACCGGGGGATT AAACGTGGTCAACGCTA AACTGGGGGATAATTTTTTTTT  GTGTAGGGT GGGGGATTCAAAGGGGGAAAACGTTGAAAGTTAAAACTAGTAAGTTTT GTT G     TCTGTCA      CT GTTC   AGTC  AG GTTC GT   
TTTTTATAT                           G                 A                      TT         C                                                A   G TAAGT       --TTTT  A    TTT    --  C    G  ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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