SE2020570

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5772
  • Medicago truncatula
  • SE2020570
  • Mutator
  • M12
  • MtChr5:21120136-21120411
  • ACGGACCTT
  • GGACCTTGGTTGCGGTTATGGTGCATAAGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AC  A  T   T                      GGAA        G      A          G      T  C  T    TGTAC   A    A      TGTATTTAATGGTTTCCAACACATGCATAAATCATAGTAT
  GG CC TGG TGCGGTTATGGTGCATAAGGAA    ATCCTTAT TACCCT CATAAATCCA AAATGG TT TG GAGT     TTC AAAC ATTAGA                                        
  || || ||| ||||||||||||||||||||||    |||||||| |||||| |||||||||| |||||| || || ||||     ||| |||| ||||||                                        G
  CC GG ACC ACGCCAATACCACGTATTCCTT    TAGGAATA GTGGGA GTATTTAGGT TTTACC AA AC CTCA     AAG TGTA TTTAGT                                        
TT  A  C   C                      ----        A      C          A      T  -  -    -TGTT   -    -      AAAAGTCTCGTTTTACCAAAACCGTATTAAAATATGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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