Plant MITE

SE2010575

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5777
Medicago truncatula
SE2010575
Tc1/Mariner
St6
MtChr5:5219975-5220270
TA
TACTCCCTCCGTCCCAATTTAATT

Secondary structure and sequence

TSD TIR

5'

3'

      C         ATT              G  CATTACACACTTATTAAGAAAAATATATTAGTGAAGGAGAGAGAAAAATGGTTTTGAGTGTCTTTGTTAAGTATTGGTTCATTCTTCTTTATCATAAATGTAAAGTAGAATA
TACTCC TCCGTCCCA   TAATTGAACCATTT CT                                                                                                                
|||||| |||||||||   |||||||||||||| ||                                                                                                                T
ATGAGG AGGCAGGGT   ATTGACTCTGTAAA AA                                                                                                                
      C         ATT              -  TTATTTTTTCACAGGGTTTTATTGACACAGTAAAGTGAAAGGTTATGTCATAATTAATGAAAAAAGTTTAATATTGAGATTAATTATAATGAAAGTGGTGAAGGTTATGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010575

TACTCCCTCCGTCCCAATTTAATTGAACCATTTGCTCATTACACACTTATTAAGAAAAATATATTAGTGAAGGAGAGAGAAAAATGGTTTTGAGTGTCTTTGTTAAGTATTGGTTCATTCTTCTTTATCATAAATGTAAAGTAGAATATATTGTATTGGAAGTGGTGAAAGTAATATTAATTAGAGTTATAATTTGAAAAAAGTAATTAATACTGTATTGGAAAGTGAAATGACACAGTTATTTTGGGACACTTTTTTATTAAAAATGTCTCAGTTATTATGGGACGGACGGAGTA

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