Plant MITE

SE2020576

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5778
Medicago truncatula
SE2020576
Mutator
M125
MtChr8:21209807-21210079
ATACTTTAG
TAGGGTTAAATAAGTAAATAGTTCTCTTAAATATACCAACATTTGATTTTAGTCCCCTCAAAATATTCTTTAGGTTTTTGGTCCTTCTAAAAATTTTCATCTATGAAATTAGTCCATACTC

Secondary structure and sequence

TSD TIR

5'

3'

ATACTT                       C                                CTC             G                   A       C              -------------      TAC
      TAGGGTTAAATAAGTAAATAGTT TCTTAAATATACCAACATTTGATTTTAGTCCC   AAAATATTCTTTA GTTTTTGGTCCTTCTAAAA TTTTCAT TATGAAATTAGTCC             ATACTC   
      ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||             ||||||    
      ATCCCAATTTATTCATTTGTTAG AGAATTTATATGGTTGTAAACTAAAATCAGGG   TTTTATAAGAAAT CAAAAACCAGGGAGATTTT AAAAGTA ATACTTTAATCAGG             TATGAG   
TTTCAT                       A                                AAA             A                   A       A              GACTAGATCAGAT      TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020576

ATACTTTAGGGTTAAATAAGTAAATAGTTCTCTTAAATATACCAACATTTGATTTTAGTCCCCTCAAAATATTCTTTAGGTTTTTGGTCCTTCTAAAAATTTTCATCTATGAAATTAGTCCATACTCTACATTGAGTATTAGACTAGATCAGGGACTAATTTCATAAATGAAAAATTTTAGAGGGACCAAAAACATAAAGAATATTTTAAAGGGACTAAAATCAAATGTTGGTATATTTAAGAAGATTGTTTACTTATTTAACCCTATACTTT

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