SE2020579

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5781
  • Medicago truncatula
  • SE2020579
  • Mutator
  • M40
  • MtChr5:16524168-16524569
  • TTTTGTGTA
  • AGGTTTAATTGTATGTTTGGTCTCTTACGTGTATTTTAGGTTTTATGTTGGTCCTTTATATTTTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTGTGT   T         T             C  G              T             A       ----A    CAAGTTGCTTCTAAATGTTACTCAGATTGAAATAAGTTAGTCTCTTCCGTCACTTGACCGTTTAAAGATTTGGGTTGACAACATCGGTGATGAAATTTAACTTATTTAGAAAATCAGTT
        AGG TTAATTGTA GTTTGGTCTCTTA GT TATTTTAGGTTTTA GTTGGTCCTTTAT TTTTAAA     GTTT                                                                                                                       
        ||| ||||||||| ||||||||||||| || |||||||||||||| ||||||||||||| |||||||     ||||                                                                                                                        
        TCC AATTAACGT CAAACTAGGGAAT CA ATAAAATCCAAAAT CAACCAGGGAATA AAAATTT     GTTC                                                                                                                       
ATGTGTTT   T         T             A  A              T             C       ATAAA    AACCAGAGAACGCAAAATTTCCAAAGTTCAACCAGATTTTGCAATGCGTGCAACCTTATTCAATCAGAGAAGACAGTGTACTATAACTCAAATTGTTTTGTTTTGTTTTTTTTCAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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