Plant MITE

SE2020584

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5786
Medicago truncatula
SE2020584
Mutator
M13
MtChr5:13234973-13235326
TAGCATTTT
GGCTTAATTGCAG

Secondary structure and sequence

TSD TIR

5'

3'

TAGCATTTT          C  --ATCTG   A            T    -           C                         A   C   C           GA   -   AAAATGGGATGTGATAAATTTTAAATGTAGTGGAATATGATATGAAGATAGAAAAAGATTAA
         GGCTTAATTG AG       CTC TCTATTTTCATT TTTT TGGAATTGGTT CTTTATTTTAAAATTTGACAGTTTT GTC TTC ATCATATATTT  ATT ATA                                                              
         |||||||||| ||       ||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||  ||| |||                                                              T
         CCGAATTAAT TC       GGG AGATAAAAGTAA AAAA GCTTTAACTAG GGAATAAAATTTTAAGCTGTTAAAA TAG GAG TAGTGTATAAA  AGA TTT                                                              
TTTTATAAT          A  AAAACTA   -            T    C           A                         C   A   A           AC   T   ATAACACTATGCTATACAAAATTTACTTTAAAAATTTCCTTAAAACAATGTTAAAGTAGCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020584

TAGCATTTTGGCTTAATTGCAGATCTGCTCATCTATTTTCATTTTTTTTGGAATTGGTTCCTTTATTTTAAAATTTGACAGTTTTAGTCCTTCCATCATATATTTGAATTATAAAAATGGGATGTGATAAATTTTAAATGTAGTGGAATATGATATGAAGATAGAAAAAGATTAATATCGATGAAATTGTAACAAAATTCCTTTAAAAATTTCATTTAAAACATATCGTATCACAATATTTTAGACAAAATATGTGATAGAGAGATCAAAATTGTCGAATTTTAAAATAAGGAGATCAATTTCGCAAAATAATGAAAATAGAGGGATCAAAACTATAATTAAGCCTAATATTTT

Copy Cancel