SE2020588

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5790
  • Medicago truncatula
  • SE2020588
  • Mutator
  • M54
  • AC130806:9896-10380
  • TAATATTAA
  • TAATATTAAGGCTTAATTGCACTTTTTCCCCCTATAGTTTGCCAATTGTGC

Secondary structure and sequence

TSD    TIR
5'



3'
         A        T        TC                     G   TTTTTCACCCCCATAGTTTTAAACGAGCGATTTTGCCCCCTATAGTTTTCCCCCTTTCTGATTTTATGGTCCCCATAACATTTAGTGTTGATATGTCTGTTTTTTATCAATCAATGTGTGCCACGTGTGTAATTCCATTTTTTAAAATATAAAAAAAATTGTATTTTTTAGATTTTGAGAGAAGGAGGCA
 TAATATTA GGCTTAAT GCACTTTT  CCCCTATAGTTTGCCAATTGT CGA                                                                                                                                                                                              
 |||||||| |||||||| ||||||||  ||||||||||||||||||||| |||                                                                                                                                                                                              C
 ATTATAAT CCGAATTA CGTGAAAA  GGGGATATCAAACGGTTAACA GCT                                                                                                                                                                                              
A        -        T        --                     G   AAAACGTGGGATATCAAAAGGGGGAAAGACTAAAATACCAGGGGTATTGTAAATCACAACTATACAGACAAAAAATAGTTAGTTACACACGGTGCACACATTAAGGTAAAAAAATTTTTATTTTTTACCATAAAAAGTCTAAAACTCTCTTCCTCGTGCACTAAAAAGTCTACAATTCTTCTTTATAGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End