Plant MITE

SE2020589

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5791
Medicago truncatula
SE2020589
Mutator
M113
MtChr2:27314117-27314309
ATAATTAAG
TAATTAAGGG

Secondary structure and sequence

TSD TIR

5'

3'

 A      A   GAAA             C     A   C        G  C      -A        --- TATGAAAAATTATGTATTCATTGCATT
  TAATTA GGG    TGTTAACGAGTAT CCCGG GCA TCTTTAAG GT TTAAAT  ATAATTTT   T                           
  |||||| |||    ||||||||||||| ||||| ||| |||||||| || ||||||  ||||||||   |                           G
  ATTAAT CCC    ACAATTGCTCATG GGGCT CGT AGAAATTC TA AATTTA  CCTTTAAT   A                           
GA      A   -AGA             A     C   A        G  T      AT        AAG AATTTTTTTAAGTTTATCAAGTTAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020589

ATAATTAAGGGGAAATGTTAACGAGTATCCCCGGAGCACTCTTTAAGGGTCTTAAATAATAATTTTTTATGAAAAATTATGTATTCATTGCATTGGAAATTGAACTATTTGAATTTTTTTAAAGAATAATTTCCTAATTTAATATGCTTAAAGAATGCCTCGGGAGTACTCGTTAACAAGACCCATAATTAAG

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