Plant MITE

SE2050591

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5793
Medicago truncatula
SE2050591
PIF/harbinger
To12
MtChr7:7861607-7861961
TTA
AGGGTGTGTTTGTTTCAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                     ATAATT   G     C        AATGATAGAAATGTATATGCC        TTACA     -  TAAAATTTATTCCTTGGTATAAAATGTTCCTGGGAATAGAAAAAATTTCCCAAGGAAAAGGGTGGGAATAAAGTTCCCATGGAGATGGGAATAAATTCATA
  AGGGTGTGTTTGTTTCAAGTT      GTT ATTCC GGGAATAA                     TATGTTTG     AGTTT AC                                                                                                     
  |||||||||||||||||||||      ||| ||||| ||||||||                     ||||||||     ||||| ||                                                                                                     A
  TCCCACACAAACAAAGTTCAA      TAA TAAGG TCCTTATT                     TAAGGAAC     CTTAT TT                                                                                                     
AT                     ATGGTT   A     A        --------------------G        -----     A  TCTACTCTTAAAATAAGGTTCCTTAAATCCTTTTTATACAAACCAATCGAAATATTATAAGGATCCTTGGTATTTTTATCCCTAATATTATCCATTTGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050591

TTAGGGTGTGTTTGTTTCAAGTTATAATTGTTGATTCCCGGGAATAAAATGATAGAAATGTATATGCCTATGTTTGTTACAAGTTTACTAAAATTTATTCCTTGGTATAAAATGTTCCTGGGAATAGAAAAAATTTCCCAAGGAAAAGGGTGGGAATAAAGTTCCCATGGAGATGGGAATAAATTCATAAATAGTTTACCTATTATAATCCCTATTTTTATGGTTCCTAGGAATATTATAAAGCTAACCAAACATATTTTTCCTAAATTCCTTGGAATAAAATTCTCATCTTTATATTCCAAGGAATGTTATTCCTAGGAATAAATTTGGTAAACTTGAAACAAACACACCCTTA

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