Plant MITE

SE2020593

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5795
Medicago truncatula
SE2020593
Mutator
M127
MtChr5:40096245-40096444
AATAATAAT
TGGGTCATATTAACTAGTGCCCCGGGCCACTAGTTAAGAAAG

Secondary structure and sequence

TSD TIR

5'

3'

AATAATAA     C  A          C       C     T    AA  TAAAAAA      ----------CTTCTAC        AACAAATTTTTGACTTTT
        TGGGT AT TTAACTAGTG CCCGGGC ACTAG TAAG  AG       TAGAAA                 TTGAAAAT                  
        ||||| || |||||||||| ||||||| ||||| ||||  ||       ||||||                 ||||||||                   
        ACCCA TA AATTGATCAC GGGCCCG TGATC ATTC  TC       ATCTTT                 AATTTTTT                  
TAATAAAA     T  C          A       -     T    -A  TGATTAA      AAAACGTAACTCTTAAC        AACATACAAGTTGAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020593

AATAATAATGGGTCATATTAACTAGTGCCCCGGGCCACTAGTTAAGAAAGTAAAAAATAGAAACTTCTACTTGAAAATAACAAATTTTTGACTTTTAAAAAGTTGAACATACAATTTTTTAACAATTCTCAATGCAAAATTTCTAAATTAGTCTACTTATCTAGTGCCCGGGACACTAGTTAACATTACCCAAAAATAAT

Copy Cancel