Plant MITE

SE2020613

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5815
Medicago truncatula
SE2020613
Mutator
M128
MtChr8:19443208-19443554
TATTTTGGA
AGAATTCTGTTCTTTACCCAAC

Secondary structure and sequence

TSD TIR

5'

3'

TATTTTGG                C     CAAAA          C             CAT      C             A         -----         --       -  -    A    T GCTTGAGTTAGTATTTTGATTAACACTAGCATGAGTTAACTCACAGTAA
        AGAATTCTGTTCTTTA CCAAC     TTGCTCGTTC TAGCTGAAATTTG   AATGTC TTGCGTGAGTTAA TCATGTTGG     GTGAGTTAA  CTCATGC TA GTGT AATC T                                                 
        |||||||||||||||| |||||     |||||||||| |||||||||||||   |||||| ||||||||||||| |||||||||     |||||||||  ||||||| || |||| |||| |                                                  
        TCTTAAGACGAGAAAT GGTTG     AACGAGTAAG ATTGGCTTTAAAT   TTATAG GACGCACTCAATT AGTGCGATC     TTTAACATA  GAATTAG TG GACG CACT C                                                 
AGGTTTTA                A     TATAA          A             TCT      A             G         ACAAT         CT       G  C    -    - AATTGAGTGCGATCACAATTAGTTTTATGATTGAGTTCGTTCTAAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020613

TATTTTGGAGAATTCTGTTCTTTACCCAACCAAAATTGCTCGTTCCTAGCTGAAATTTGCATAATGTCCTTGCGTGAGTTAAATCATGTTGGGTGAGTTAACTCATGCTAGTGTAAATCTTGCTTGAGTTAGTATTTTGATTAACACTAGCATGAGTTAACTCACAGTAATGTAAATCTTGCTTGAGTTAGTATTTTGATTAACACTAGCGTGAGTTAACTCACGCAGCGTGGATTAAGTCATACAATTTTAACACTAGCGTGAGTTAACTCACGCAGAGATATTTCTTAAATTTCGGTTAAGAATGAGCAAAATATGTTGGATAAAGAGCAGAATTCTATTTTGGA

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