Plant MITE

SE2010618

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5820
Medicago truncatula
SE2010618
Tc1/Mariner
St11
AC233577:24130-24391
TA
TACTCCCTCCGTCCCTAAATAAATGATCTAGTTGACTCTGACACACATAC

Secondary structure and sequence

TSD TIR

5'

3'

                A          C        ----------TC    -AC      -CAATG     G      -  ---    TATCTTCAATTCTCTACTAAAAAAAATTATAAAAATTTAATATTTTAAAA
TACTCCCTCCGTCCCT AATAAATGAT TAGTTGAC            TGAC   ACATAC      CATAT TTTTAT CT   TTGA                                                  
|||||||||||||||| |||||||||| ||||||||            ||||   ||||||      ||||| |||||| ||   ||||                                                  A
ATGAGGGAGGCAGGGA TTATTTACTG GTCAACTG            ACTG   TGTATG      GTATG AAAATA GA   AGTG                                                  
                A          A        TTATATGTATTA    AAC      AAACTG     -      T  TTA    TTTCTATTTATTATAGTACATTCTACAACAACCTAAGCAGAGCTACTCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010618

TACTCCCTCCGTCCCTAAATAAATGATCTAGTTGACTCTGACACACATACCAATGCATATGTTTTATCTTTGATATCTTCAATTCTCTACTAAAAAAAATTATAAAAATTTAATATTTTAAAAATACTCATCGAGACGAATCCAACAACATCTTACATGATATTATTTATCTTTGTGAATTAGTATAAAAGTATGGTCAAAGTATGTCAAGTCAATTATGTATATTGTCAACTGAGTCATTTATTAAGGGACGGAGGGAGTA

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