SE2020619

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5821
  • Medicago truncatula
  • SE2020619
  • Mutator
  • M129
  • MtChr5:35578614-35579012
  • TTTTTTATA
  • TATAGGAAAATTTTATGGTGATGTCATGAGAATGACTTTTCTTGTGAAGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTT         --A     T    AT    T    A        C   -T       --------    GTCAATCATTGAGCATTTGTGAATTTAATTCATGTCGCATCAGATTACATGGTGTATTGCACATTTGCTCATAAGGTGTGTCATTATATCTTTACTTATTACAATTGTGTCCCCGATTAAATCAAAATTAAACATA
     TATAGGAAA   TTTTA GGTG  GTCA GAGA TGACTTTT TTG  GAAGTTA        AATG                                                                                                                                        
     |||||||||   ||||| ||||  |||| |||| |||||||| |||  |||||||        ||||                                                                                                                                         
     ATATTTTTT   AAGAT CCAC  CAGT TTTT ATTGAAAA AAC  TTTCAAT        TCGA                                                                                                                                        
              CCG     T    AT    T    G        -   CT       AAAACAAA    TTATCATATTGACCGCTACAGTTCAGTTGATCACAGCACGACCACCGGGTGAGATTTTGATTTGAAATGGAATAATGTTTAGTTAAGAGTATGTTCTATAATTCCCTTAAAGTTAGAATCACGTGTTTACTCTTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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