Plant MITE

SE2010620

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5822
Medicago truncatula
SE2010620
Tc1/Mariner
St6
MtChr7:5772299-5772594
TA
TACTCCCTCCGTCCCGAATTAGCTGAGCCATT

Secondary structure and sequence

TSD TIR

5'

3'

                AAT                 -  T    CACGTATTAAGACA  -----     A  TGAATGAGAGAGAAAAATGGTTTTAAGTGTTCTTGTTTAAGTATTGGTGCATTCTCCACTATCATAAATGCAAAGTGGAATATATT
TACTCCCTCCGTCCCG   TAGCTGAGCCATTTTTT CA TTCA              AA     TGTAT AA                                                                                      
||||||||||||||||   ||||||||||||||||| || ||||              ||     ||||| ||                                                                                       
ATGAGGGAGGCAGGGT   ATTGACTCGGTAAACGT TT TTTC              AC     TTTAT TG                                                                                      
                GTT                 T  -    --------------  AGGGT     -  ACTCGGTAAAGTGAAAAGTTATGTTATAATTAATGAAAAAAGGGAATATATTGAGATCAATTATGATGAAAGTGTTGAAGGTTAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010620

TACTCCCTCCGTCCCGAATTAGCTGAGCCATTTTTTCATTTCACACGTATTAAGACAAATGTATAAATGAATGAGAGAGAAAAATGGTTTTAAGTGTTCTTGTTTAAGTATTGGTGCATTCTCCACTATCATAAATGCAAAGTGGAATATATTGAATTGGAAGTTGTGAAAGTAGTATTAACTAGAGTTATATAAGGGAAAAAAGTAATTAATATTGTATTGAAAAGTGAAATGGCTCAGTTATTTTGGGACACTTTTTTTGCAAATGGCTCAGTTATTGTGGGACGGAGGGAGTA

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