Plant MITE

SE2020633

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5835
Medicago truncatula
SE2020633
Mutator
M39
MtChr2:25827731-25828111
TTTATATAG
TATATAGGCTAAAATATGGTTTTAGTCCCTGCAAATATGGCTCGTTTTGGTTTTAGTCCCTGTAAACAAAAAATTTTGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCACTT

Secondary structure and sequence

TSD TIR

5'

3'

TT    -T                                  G                          CAA                            T                    A   C   GA  ATTTT  AAAACAAAACATTTTGCAGGGACCTTTTTTAAAAACAAAATATTTTGCAGGGACC
  TATA  AGGCTAAAATATGGTTTTAGTCCCTGCAAATATG CTCGTTTTGGTTTTAGTCCCTGTAAA   AAAATTTTGTTTTTGGTCCCTGCAAAAT TTTTGTTTTTGAAAATAGTC CTT AGG  CT     CA                                                       
  ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||  ||     ||                                                       A
  ATAT  TCCGATTTTATACCAAAATCAGGGACGTTTATAC GAGTAAAATCAAAATCAGGGACATTT   TTTTAAAACAAAAACCAGGGACGTTTTA AAAACAAAAACTTTTATCAG GGA TGG  GG     TG                                                       
 T    TT                                  G                          TTC                            T                    -   C   --  -----  AAAACACTACTAAACGTATGCACCGTGTAATATTGAGTTGGTTAAAACATCAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020633

TTTATATAGGCTAAAATATGGTTTTAGTCCCTGCAAATATGGCTCGTTTTGGTTTTAGTCCCTGTAAACAAAAAATTTTGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCACTTCAGGGACTATTTTCAAAAACAAAACATTTTGCAGGGACCTTTTTTAAAAACAAAATATTTTGCAGGGACCAAAAACTACAAAATTGGTTGAGTTATAATGTGCCACGTATGCAAATCATCACAAAAGTGGGGTCAGGGACTATTTTCAAAAACAAAATATTTTGCAGGGACCAAAAACAAAATTTTCTTTTTACAGGGACTAAAACTAAAATGAGGCATATTTGCAGGGACTAAAACCATATTTTAGCCTTTTATAT

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