SE2050635

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5837
  • Medicago truncatula
  • SE2050635
  • PIF/harbinger
  • To13
  • MtChr5:7734989-7735130
  • TTA
  • AGTACATGTTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   A           TGAC         AACAT   C       AC      A      ACAA      CAT
  AGT CATGTTTGGAT    GGTGAGTTT     AAT ACGGTGA  CACTGT ATTTTG    AAGTTA   
  ||| |||||||||||    |||||||||     ||| |||||||  |||||| ||||||    ||||||   T
  TCA GTACAAACCTA    TCACTCAAA     TTA TGCCACT  GTGGTA TAAAAC    TTCGAT   
AT   C           ----         CTATT   A       --      C      -AAC      ATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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