Plant MITE

SE2030655

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5857
Medicago truncatula
SE2030655
hAT
Hat27
MtChr2:20591783-20592528
GATAAAAC
CTAGAGCTGTCAAAACGGGCTG

Secondary structure and sequence

TSD TIR

5'

3'

GATAAAA                      CCCGAC   AA            ----------------TAAC      C        -------  G   -----------     CAAAAAGCCCGGTTGAAAAAACGGGCTTGAAATATACTACCCGAGCCCAGCCCTACACGGGCCGCGGGCTAACGGGCCGGCCCTTATTAAAAATTACATTTTTTTTTATATAAAAAAGTACTAAAAAAATACTCCTATAGATTTTTTATAAATAAATTTTTAATATGTTTAAATAATGTCTAGCACAAAAATAAATTGCAAACATTTTCGTACACTAGTCGTAAACTAAAACGGCGAGGATAACAATTTTAAATAAATTAGATACGTTATGGTTATA
       CTAGAGCTGTCAAAACGGGCTG      CCT  ATGGGCCGGCCC                    GGGCTT GGGCTTTA       TT GAC           CGGGC                                                                                                                                                                                                                                                                                     
       ||||||||||||||||||||||      |||  ||||||||||||                    |||||| ||||||||       || |||           |||||                                                                                                                                                                                                                                                                                     G
       GATCTCGACAGTTTTGCCCGGC      GGA  TACCCGGCTGGG                    CCCGAA CCCGGAAT       TC GGG           CCCGA                                                                                                                                                                                                                                                                                     
CAAAATA                      ----CC   -A            TAAATCGGACTAATTAATAT      -        TTATAAC  -   CTTAAAATTAT     AAAATCGGGCCGAGATTTTTCGGGCCATGGGCAATCCCGATCAGGCTTGCCCGGCGCCCATCGGGCAATCGGGCGTATTGTTTTTTTAGGATATTTAATATATATAAAAAGTTTATTAAGAAATGAATCAACTAATAGTTTGACTTTTTATTTTCACTTTTAAGTTACTTAATTGTGTATACTTACATTATATTTTAATATAAATGAGCAAATCAATAAATATTAAAATTTTTAGTTTATATATTTATAGATATTGAAAAAATTCCCTTCATTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030655

GATAAAACTAGAGCTGTCAAAACGGGCTGCCCGACCCTAAATGGGCCGGCCCTAACGGGCTTCGGGCTTTATTGGACCGGGCCAAAAAGCCCGGTTGAAAAAACGGGCTTGAAATATACTACCCGAGCCCAGCCCTACACGGGCCGCGGGCTAACGGGCCGGCCCTTATTAAAAATTACATTTTTTTTTATATAAAAAAGTACTAAAAAAATACTCCTATAGATTTTTTATAAATAAATTTTTAATATGTTTAAATAATGTCTAGCACAAAAATAAATTGCAAACATTTTCGTACACTAGTCGTAAACTAAAACGGCGAGGATAACAATTTTAAATAAATTAGATACGTTATGGTTATAGATATTTACTTCCCTTAAAAAAGTTATAGATATTTATATATTTGATTTTTAAAATTATAAATAACTAAACGAGTAAATATAATTTTATATTACATTCATATGTGTTAATTCATTGAATTTTCACTTTTATTTTTCAGTTTGATAATCAACTAAGTAAAGAATTATTTGAAAAATATATATAATTTATAGGATTTTTTTGTTATGCGGGCTAACGGGCTACCCGCGGCCCGTTCGGACTAGCCCTAACGGGTACCGGGCTTTTTAGAGCCGGGCTAAAAAGCCCTATTAAAATTCGGGCTCAATATTTAAGGCCCAAGCCCTATAATTAATCAGGCTAAATGGGTCGGCCCATAAGGCCCGGCCCGTTTTGACAGCTCTAGATAAAAC

Copy Cancel