Plant MITE

SE2020657

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5859
Medicago truncatula
SE2020657
Mutator
M10
MtChr5:28762175-28762392
GTCAGAACC
CGAGTTAAGATCTTCTCCATTTATTAT

Secondary structure and sequence

TSD TIR

5'

3'

GTCAGAAC  A  T                AT   TCTCTCCATTTCATT  -          T     G   -     TTCGAAAA   TACAAGTAATTAATGATGGTGGG
        CG GT AAGATCTTCTCCATTT  TAT               CA TTTGGAGAGA ATAGA ACA AAAAT        ACT                       
        || || ||||||||||||||||  |||               || |||||||||| ||||| ||| |||||        |||                       A
        GC CA TTCTAGGAGAGGTAAA  ATA               GT AAACCTCTCT TATCT TGT TTTTA        CTA                       
CCAAGACT  C  T                CC   TTATTTACCTCATAC  T          C     G   C     -------T   TCACCCAGGATGATAATTCACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020657

GTCAGAACCGAGTTAAGATCTTCTCCATTTATTATTCTCTCCATTTCATTCATTTGGAGAGATATAGAGACAAAAATTTCGAAAAACTTACAAGTAATTAATGATGGTGGGACCCACTTAATAGTAGGACCCACTATCTATTTTCTGTGTCTATCTCTCTCCAAATTGCATACTCCATTTATTATACCAAATGGAGAGGATCTTTACCCGTCAGAACC

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