Plant MITE

SE2010659

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5861
Medicago truncatula
SE2010659
Tc1/Mariner
St4
MtChr3:1103179-1103343
TA
TACTCCCTCCGTTTTTTAATATAAGCAAATTTTGACTTTCAGGTTCATTCAATTAATGATGTAT

Secondary structure and sequence

TSD TIR

5'

3'

                                       C         C              TCAATTAA    G     AGCT
TACTCCCTCCGTTTTTTAATATAAGCAAATTTTGACTTT AGGTTCATT AATTAATGATGTAT        TGAT TATGT    
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||        |||| |||||     
ATGAGGGAGGCAAAAAATTATATTCGTTTAAAATTGAAA TCCAAGTAA TTAATTACTACATA        ACTA ATATA    
                                       A         A              -------C    G     ATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010659

TACTCCCTCCGTTTTTTAATATAAGCAAATTTTGACTTTCAGGTTCATTCAATTAATGATGTATTCAATTAATGATGTATGTAGCTTATAATATAGATCACATACATCATTAATTAAATGAACCTAAAAGTTAAAATTTGCTTATATTAAAAAACGGAGGGAGTA

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