Plant MITE

SE2020662

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5864
Medicago truncatula
SE2020662
Mutator
M134
MtChr3:28903452-28903651
TTTAAATAA
AAGGGAAATGTTAAGTAGTGC

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAAT     AA     A G      CCCAA                 AACT  T     ----AACTTTG    GAGAAATGGTGAAAAGTAGAATGTTTA
       AAGGG  ATGTT A TAGTGC     GGGCACTAGTTAAGGAA    AA ATAGA           CATT                           
       |||||  ||||| | ||||||     |||||||||||||||||    || |||||           ||||                            
       TTCCC  TACAA T ATCACG     CCCGTGATCAATTCCTT    TT TATCT           TTTT                           
AATAAAT     AG     A G      ---CC                 -CGT  T     AAAAAAAATAA    CGTTGTTAAAAAACTGAAAGTATTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020662

TTTAAATAAGGGAAATGTTAAGTAGTGCCCCAAGGGCACTAGTTAAGGAAAACTAATATAGAAACTTTGCATTGAGAAATGGTGAAAAGTAGAATGTTTAACTTTATGAAAGTCAAAAAATTGTTGCTTTTAATAAAAAAAATCTATTTTTGCTTCCTTAACTAGTGCCCCCGCACTAGTAAACATGACCCTTTAAATAA

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