SE2050666

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5868
  • Medicago truncatula
  • SE2050666
  • PIF/harbinger
  • To2
  • MtChr8:934271-934665
  • TTA
  • AGGCTTTGTTTGCGAGTTTGGAGGGGAAGGGAAGGAAAGGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                                           ------------------------------------     --  ACAAAATTAT   ---  AAAATTGAGAAATCTTTCACATTTTTTGAAAGAGTATTTTTTTAGAGAGTGATAAATTAATACATATCATTAATATATGTTTAATTTTAAAAATATTATAACAACATATATTAAA
  AGGCTTTGTTTGCGAGTTTGGAGGGGAAGGGAAGGAAAGGCTT                                    TGGGG  GG          AGA   GG                                                                                                                   
  |||||||||||||||||||||||||||||||||||||||||||                                    |||||  ||          |||   ||                                                                                                                    
  TCCGAAACAAACGCTCAAACCTCCCCTTCCTTTCCTTTCCGAA                                    TGTAA  CT          TCT   CG                                                                                                                   
AT                                           CCTTTTTATCCTTCCTCATTCACCTTCTTTATCTCC     CC  ----------   CCC  AAACCTCCCGAATAAAAAGAAGTTTTATATTTTGGGAGGAGTAAACCCCCTTGAATTTTTAACATAACCTCCTCCCAAAACCCCCCAAATTCTCCCAAATATACTTAAGAAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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