Plant MITE

SE2020671

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5873
Medicago truncatula
SE2020671
Mutator
M61
MtChr6:17236591-17236953
TTATATTTA
ATATTTAGGCTTATTCAAT

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TT             CACC  A        A       A    C        A      A                         C                              C     AG          -     ----    CGTTAACTTGTATCAATTTGGTCCCCTATG
   ATAT  AGGCTTATTCAAT    CG TCCCTTAA TTAATTG TTGT TTAATTTG TCCCCT ACTATAATTTGTATCAATTTGGTCC CTATGTTTTGCTTCGTTACTAGTTTTAGTC TTTCT  TAGTTTTTCT AAAAA    AAAA                              
   ||||  |||||||||||||    || |||||||| ||||||| |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||| |||||    ||||                               
   TATA  TCCGAATAAGTTA    GC AGGGAATT AATTAAC AACA AGTTAAAC AGGGGA TGATATTAAACATGGTTAAACCAGG GATACAAAACGAAGCAATGATCAAAATCAG AAAGA  ATCAAAGAGA TTTTT    TTAG                              
ATT    -T             ATAA  C        G       C    A        C      C                         A                              T     CA          G     ACAC    CTTTCCTGATTTTGATCCTTGCCTCGTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020671

TTATATTTAGGCTTATTCAATCACCCGATCCCTTAAATTAATTGATTGTCTTAATTTGATCCCCTAACTATAATTTGTATCAATTTGGTCCCCTATGTTTTGCTTCGTTACTAGTTTTAGTCCTTTCTAGTAGTTTTTCTAAAAAAAAACGTTAACTTGTATCAATTTGGTCCCCTATGTTTTGCTCCGTTCCTAGTTTTAGTCCTTTCGATTCACATTTTTGAGAGAAACTAACAGAAATGACTAAAACTAGTAACGAAGCAAAACATAGAGGACCAAATTGGTACAAATTATAGTCAGGGGACCAAATTGAAACAACCAATTAAGTTAAGGGACCGAATAATTGAATAAGCCTTATATTTA

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