Plant MITE

SE2010673

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5875
Medicago truncatula
SE2010673
Tc1/Mariner
St21
MtChr7:15338133-15338448
TA
TACTCCCTCCGTCCCATAATATAAGCAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

                TAA            --      - C    --------  T   TCCCAAAATATA  CAAAAAAAAAAAACTTTTATCTTTTCCAAGATTTTTTTTTGTTATTCTCATAAAATTAAATGCAAATTACATTCAATTTTCTCTTTCTTTCATTTT
TACTCCCTCCGTCCCA   TATAAGCAAAAA  AAAAAC A ATTT        TC TTG            AG                                                                                                
||||||||||||||||   ||||||||||||  |||||| | ||||        || |||            ||                                                                                                T
ATGAGGGAGGCAGGGT   ATATTCGTTTTT  GTTTTT G TGTG        TT TTG            AT                                                                                                
                TTA            TT      A -    AATAATTC  -   ------------  TTTGTATTTTTAAACCCCATATCAAAACACACAAAAGAAACCTTTTTCAAAATATCCTTCTACATTTTTGTTAAAAGTAACCGATAACCAATACCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010673

TACTCCCTCCGTCCCATAATATAAGCAAAAAAAAAACACATTTTCTTTGTCCCAAAATATAAGCAAAAAAAAAAAACTTTTATCTTTTCCAAGATTTTTTTTTGTTATTCTCATAAAATTAAATGCAAATTACATTCAATTTTCTCTTTCTTTCATTTTTTCCATAACCAATAGCCAATGAAAATTGTTTTTACATCTTCCTATAAAACTTTTTCCAAAGAAAACACACAAAACTATACCCCAAATTTTTATGTTTTAGTTTTCTTAATAAGTGTGATTTTTGTTTTTTTGCTTATAATTTGGGACGGAGGGAGTA

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