Plant MITE

SE2030674

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5876
Medicago truncatula
SE2030674
hAT
Hat1
MtChr8:19710140-19710716
CTTCAAAT
TTCAAATTAGGCATGGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

 C     AT                      T     -  GGTTTTACCTTCCCCGTCCCCATACCCGATTCTCATATACTTACCCGTTACCCTACCCATACCCAACGAGGATGAGAAATTGAATCCCATCCCCGTTCCCGACGGGTTCGGGTATCCCCGCCCCATCCCCGTCCCCGCATTGAATAAATTTTTTAGTAAAAAATATAAGTTTTTTTGCATCCCCAAGAGCAACGTTGTAATACATTATCCAACAATAAGCTCACTTTCACATTTGTTAGACAAAATTATT
  TTCAA  TAGGCATGGCAATGGGGCGGGG GGGGA CG                                                                                                                                                                                                                                                          
  |||||  |||||||||||||||||||||| ||||| ||                                                                                                                                                                                                                                                          T
  AAGTT  ATCCGTACCGTTGTTTTGGGTA TGGGC CC                                                                                                                                                                                                                                                          
TA     -C                      -     A  AATGGGCGGGCTTTGTTTGGGTTAAACTGCCCAAAAGGGGCAAAACTGACCCAAACCCATACCCATACCCAAAAGGGGCTAGAGCTTTGTGCCCATACCCTGCCCATTGCCCATATATCCATGGGTGGGGCTTGGGTATGGGTTTGGGCAGGGTTTACATTTTTTTGATAAAATACAACTATACAATACAATAAAACAAACTATTAACAGTACAATTATTTTTGATGGTAACTATAAATTTCCTAGTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030674

CTTCAAATTAGGCATGGCAATGGGGCGGGGTGGGGACGGGTTTTACCTTCCCCGTCCCCATACCCGATTCTCATATACTTACCCGTTACCCTACCCATACCCAACGAGGATGAGAAATTGAATCCCATCCCCGTTCCCGACGGGTTCGGGTATCCCCGCCCCATCCCCGTCCCCGCATTGAATAAATTTTTTAGTAAAAAATATAAGTTTTTTTGCATCCCCAAGAGCAACGTTGTAATACATTATCCAACAATAAGCTCACTTTCACATTTGTTAGACAAAATTATTTAGTTGATCCTTTAAATATCAATGGTAGTTTTTATTAACATGACAATTATCAAACAAAATAACATAACATATCAACATAAAATAGTTTTTTTACATTTGGGACGGGTTTGGGTATGGGTTCGGGGTGGGTACCTATATACCCGTTACCCGTCCCATACCCGTGTTTCGAGATCGGGGAAAACCCATACCCATACCCAAACCCAGTCAAAACGGGGAAAACCCGTCAAATTGGGTTTGTTTCGGGCGGGTAACCACGGGTATGGGTTTTGTTGCCATGCCTACTTGAAAT

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