SE2050676

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5878
  • Medicago truncatula
  • SE2050676
  • PIF/harbinger
  • To23
  • MtChr4:32653195-32653454
  • TAA
  • AGAGTCTGTTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA  A  -C         TGTCTTATT      T   TA -----        GCACTTATGACGTGTTGTTAAGCTGTTTTCAGCTTATGTACATAAATTCACGACGATAGCTAATGAAAACAACTTATAACTTACAC
  AG GT  TGTTTGGAT         TTAGCT ATC  C     TGACATAA                                                                                      
  || ||  |||||||||         |||||| |||  |     ||||||||                                                                                      A
  TC CG  ACAAACCTA         TTGTTG AAT  A     TTGAATGT                                                                                      
AA  -  TT         ---------      -   -- AAAAG        GGATATCGAATTTGTGAACATTAAATTCGCGAATACTTATTTGATATAAAGATAATGTGTACTATTGTATTTCAGTTAAACAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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