Plant MITE

SE2020677

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5879
Medicago truncatula
SE2020677
Mutator
M4
MtChr1:18892464-18892770
TTTTTATTT
GGGTTAATGGTGCTTTACCCCCTGTAATATAGGTCATTTTTGGTTTTCCTCCCCTGTAAAATATTTTTTTTGATTTACCCCCCTGTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTATTT                      -                   G       T                                C      TTTTTTATTTTTGG                               AAATTCTGCAA
         GGGTTAATGGTGCTTTACCCCC TGTAATATAGGTCATTTTT GTTTTCC CCCCTGTAAAATATTTTTTTTGATTTACCCCC TGTAAA              AATACCCCCTAATAGGTCATAAAAAAACGAA           
         |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||           A
         CCCAATTACCACGAAATGGGGG ACATTATATCCAGTAAAAA TAAAAGG GGGGACATTTTATAAAAAAAACTAAATGGGGG ACATTT              TTATGGGGGATTATCCAGTATTTTTTTGCTT           
TTTATTTTT                      G                   A       -                                -      -TTTTTTTTTTAAA                               AAATAAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020677

TTTTTATTTGGGTTAATGGTGCTTTACCCCCTGTAATATAGGTCATTTTTGGTTTTCCTCCCCTGTAAAATATTTTTTTTGATTTACCCCCCTGTAAATTTTTTATTTTTGGAATACCCCCTAATAGGTCATAAAAAAACGAAAAATTCTGCAAAAAAAAAATAAATTCGTTTTTTTATGACCTATTAGGGGGTATTAAATTTTTTTTTTTTTACAGGGGGTAAATCAAAAAAAATATTTTACAGGGGGGAAAATAAAAAATGACCTATATTACAGGGGGGTAAAGCACCATTAACCCTTTTTATTT

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