Plant MITE

SE2010687

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5889
Medicago truncatula
SE2010687
Tc1/Mariner
St39
MtChr7:20414069-20414217
TA
TACTCCCTCCGGTCTCATATATAAGAAAATATTTTTTTTTTAGGTTCATTGAATAGTTAATGTATCTGACCTGTA

Secondary structure and sequence

TSD TIR

5'

3'

         C        ATA                               A            CTG  CT   AT
TACTCCCTC GGTCTCAT   TAAGAAAATATTTTTTTTTTAGGTTCATTGA TAGTTAATGTAT   AC  GTA  
||||||||| ||||||||   ||||||||||||||||||||||||||||||| ||||||||||||   ||  |||  A
ATGAGGGAG CCAGAGTA   ATTCTTTTATAAGAAAAAAATCCAAGTAACT GTTAATTACATA   TG  CAT  
         T        --C                               C            ---  -T   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2010687

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2010687