Plant MITE

SE2030694

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5896
Medicago truncatula
SE2030694
hAT
Hat40
MtChr8:26287256-26287479
CACATAGC
GCCAGGGGCGAATGCT

Secondary structure and sequence

TSD TIR

5'

3'

 CACATA  C  G      T   TGTACAACAAA        TATGGCTACCCCCAAAAAAAAAAATTAATGAGTTAGTAGGTATATTTTTATGTTTAGCTACCCCTAATAATATATA
       GC AG GGCGAA GCT           GGGGTAGC                                                                            
       || || |||||| |||           ||||||||                                                                            T
       CG TC CCGCTT CGA           CGTTATTA                                                                            
CAATACA  -  G      -   ----------T        AAATACTCCACCGGTGGGATTTCATTGGTTTCAGTGTTTTTTAATAATGTGGATTTTAGCTTGTATCCCATCGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030694

CACATAGCCAGGGGCGAATGCTTGTACAACAAAGGGGTAGCTATGGCTACCCCCAAAAAAAAAAATTAATGAGTTAGTAGGTATATTTTTATGTTTAGCTACCCCTAATAATATATATTTGGCTACCCTATGTTCGATTTTAGGTGTAATAATTTTTTGTGACTTTGGTTACTTTAGGGTGGCCACCTCATAAAATTATTGCTAGCTTCGCCGCTGCACATAAC

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