SE2030700

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5902
  • Medicago truncatula
  • SE2030700
  • hAT
  • Hat20
  • MtChr6:4419757-4420438
  • AGTTGGAA
  • TAGGGATGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGTTGGAA           ATTGG        ------  TATG  C    - CAAAAAA    -- GCTATGGGTAGGGTAAAACCCCGCTTTCATGGGTCCGGGTTTGGGTATGGGTAATTACCCGCAAATTTATATGGGTATGGGCACGGGTATGGGCACTGTTCTATCCAGCCCCGCAACCCGCATATATGTATTTATATAATATTATAAATATTTTTTTTTGTACAATTAATTAATAAATTTAACTATTTAAGCCTAACCTTAAACCTAAAACAGATTAATAAAAACTTTAGTAACAATTTATTATGATTTTAACATGCAACTACAACTTTTTAACGTATAACTGATGT
        TAGGGATGGCA     ACCCAGAT      CC    GG ACCC G       TACC  C                                                                                                                                                                                                                                                                                               
        |||||||||||     ||||||||      ||    || |||| |       ||||  |                                                                                                                                                                                                                                                                                                
        ATCCCTACCGT     TACCCATG      CC    TA TCCC T       GATA  A                                                                                                                                                                                                                                                                                               
AAGGTTGA           -----        GGGTTA  ----  -    A -------    TC TAGGTAGGGGTATGGGCGCAAACATTTTTTACGGGCATGGGCACAGGCATGGGAGCACCTGTTGTTGAAATCACGGGAAGGGGTATGGGATACCCGTGAATTCACGGGTATGGGCGTGGGTAATGGGCGTGAAATCGGTACCTTTCTATTATTTTTAGTGGTGTGTACTTTATTTTAATACTAGGTTTAAAAAAATTTAGTTGAATGTTTTATTATACTTAGCATTATAAATTGGTTTATTTTTTTGTAGGTTTAATAAGGACCTTTCTTTTTTTTTATCTATGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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