SE2010704

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5906
  • Medicago truncatula
  • SE2010704
  • Tc1/Mariner
  • St14
  • MtChr5:7802397-7802693
  • TA
  • TACTACCTCCGTCCCTAATTATAAGACCCTTTTGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       A  C             -----------------AAAA      CTTTTTATAAGACCCCTTTGTTATTTCCAACTACATTAATTATTTCTTTACATACATGTCCCTATTTATTATACATCTTTTTCTTCAATC
TACTACCTCCGTCCCTAATTATA GA CCTTTTGAAAAAA                     TTGTCC                                                                                          
||||||||||||||||||||||| || |||||||||||||                     ||||||                                                                                           
ATGATGGAGGCAGGGATTAATAT CT GGAAAACTTTTTT                     TATAAA                                                                                          
                       C  A             ATTGCCCTTAATTCTATCACC      CATAATTTATACAAACATTAATGATAACAAAAATGTTAAAATAGGAAATTCTCTCTCAACCAAATACAAAAGTTGTACAATAAATAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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