SE2050706

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5908
  • Medicago truncatula
  • SE2050706
  • PIF/harbinger
  • To24
  • MtChr5:9338753-9339130
  • TTA
  • AGGGGGCGTTTGTTTGACGGTTTAAAATTTCATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      C        GAC         TT C       GGATTAATCTTTCCTGGGAAATAATAATGGGCATCTTATTCCTGAGTATTTTTAGAAAATGGTGTTTGGTAAATAATTGTCAGATTCATGGGAATTGTTTGTGATAGTGGGTATATGGGTAGTTATTTCCATTTTAGTACCATTTACAT
  AGGGGG GTTTGTTT   GGTTTAAAA  T ATTCCTG                                                                                                                                                     
  |||||| ||||||||   |||||||||  | |||||||                                                                                                                                                      
  TCCCCC CAAACAAA   CCAAATTTT  A TAAGGGT                                                                                                                                                     
AT      A        GGA         TT A       CCTTGTACCTCCAACCTTAATATCTAAGGATACAAACAATGTTTCAATTTTTTTATTGAGGGCCCTTATTTCTTAAGGATCCTTTTTTTATTGAAGGTGAATGGGTACTAAAATAAGGGTTTCTTTCACCTGCCCTTATTTTCTAAGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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